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Gut Microbiota in the Treatment of Migraine with Acupuncture: A Review

Zhong et al. · Pain Therapy · 2026

📚Narrative Review🔬Multiple studies analyzed🌟High theoretical impact

Evidence Level

MODERATE
75/ 100
Quality
4/5
Sample
3/5
Replication
4/5
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OBJECTIVE

To review the mechanisms by which acupuncture treats migraine through modulation of the gut microbiota and the microbiota-gut-brain axis

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WHO

Patients with migraine and gut microbiota imbalance

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DURATION

Literature review through 2025

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POINTS

Zusanli (ST-36), Sanyinjiao (SP-6), Guanyuan (CV-4), Qihai (CV-6), Baihui (GV-20), Tianshu (ST-25), Taichong (LR-3)

🔬 Study Design

0participants
randomization

Narrative review

n=0

Analysis of studies on microbiota and acupuncture

⏱️ Duration: Comprehensive literature review

📊 Results in numbers

Confirmed

Reduced microbial diversity in patients with migraine

Significant decrease

Reduced beneficial bacteria (Faecalibacterium)

Confirmed increase

Increased pro-inflammatory bacteria (Veillonella)

Improvement demonstrated

Acupuncture restores alpha diversity

📊 Outcome Comparison

Microbiota diversity

Untreated migraine
30
After acupuncture
75

Intestinal barrier integrity

Migraine baseline
40
Post-acupuncture
80
💬 What does this mean for you?

This study shows that acupuncture may help treat migraine by supporting gut health. The research found that people with migraine often have an imbalance in their gut bacteria, and acupuncture can help restore that balance, reducing inflammation and improving communication between the gut and the brain.

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Article summary

Plain-language narrative summary

This comprehensive review examines an emerging and fascinating field of medicine: how acupuncture treats migraine through modulation of the gut microbiota and the microbiota-gut-brain axis (MGBA). Migraine, which affects approximately 14.4% of the world's population and is the second most common neurological disorder, has traditionally been viewed as a purely neurological condition. However, growing evidence reveals a complex connection between gut health and migraine attacks.

Research shows that patients with migraine display a consistent pattern of gut microbiota imbalance, characterized by decreased microbial diversity, reduced beneficial bacteria such as Faecalibacterium (a producer of anti-inflammatory short-chain fatty acids), and increased pro-inflammatory bacteria such as Veillonella. This imbalance triggers a cascade of pathological events: harmful bacteria produce lipopolysaccharides (LPS) that damage the intestinal barrier, allowing toxins to enter the bloodstream. These toxins then activate the immune system, generating pro-inflammatory cytokines such as IL-6 and TNF-alpha, which can cross the blood-brain barrier and activate the trigeminovascular system, triggering migraine attacks.

The enteric nervous system also plays a crucial role, with microbiota imbalance leading to abnormal neurotransmitter production. Reduced GABA synthesis (due to a decrease in Lactobacillus and Bifidobacterium) impairs neural inhibitory function, while alterations in tryptophan metabolism affect serotonin levels and may generate neurotoxic substances that increase neuronal excitability.

Acupuncture emerges as a multidimensional therapeutic intervention that acts through several interconnected mechanisms. First, studies show that acupuncture at specific points such as Zusanli (ST-36), Sanyinjiao (SP-6), and Baihui (GV-20) significantly increases alpha diversity of the microbiota, restoring intestinal ecological balance. The technique promotes the growth of beneficial short-chain fatty acid-producing bacteria while reducing the abundance of LPS-producing pathogenic species such as Proteobacteria and Escherichia coli-Shigella.

Second, acupuncture strengthens intestinal barrier integrity through upregulation of tight junction proteins, including ZO-1, occludin, and claudin-1. This restoration of the physical barrier prevents translocation of endotoxins and pro-inflammatory factors into the systemic circulation, interrupting the inflammatory cascade that contributes to migraine attacks.

Third, acupuncture modulates the hypothalamic-pituitary-adrenal (HPA) axis, reducing levels of cortisol and corticotropin-releasing hormone, which decreases oxidative stress and the systemic inflammatory response. This modulation also reduces emotional triggers of migraine, such as anxiety and stress.

Fourth, through regulation of the microbiota, acupuncture optimizes the production of neuroprotective metabolites. Increased production of short-chain fatty acids not only protects the intestinal barrier but also exerts direct anti-inflammatory effects on the central nervous system, promotes neurogenesis, and increases brain-derived neurotrophic factor (BDNF) production.

The clinical implications are significant. This research suggests that acupuncture offers a holistic approach to treating migraine, addressing not only neurological symptoms but also the underlying causes related to gut health. Unlike conventional medications, which often have side effects and dependence potential, acupuncture offers a safe, multitarget alternative.

For patients with migraine who also present with gastrointestinal symptoms—a common comorbidity—acupuncture may offer dual benefits, improving both intestinal function and reducing the frequency and intensity of migraine attacks.

Limitations include the need for more large-scale randomized clinical trials and studies on standardized treatment protocols. Future research should explore combinations of acupuncture with probiotics/prebiotics and investigate differences in response across migraine subtypes.

Strengths

  • 1Integrative approach connecting traditional medicine and modern neuroscience
  • 2Convergent evidence from multiple studies on dysbiosis in migraine
  • 3Clear mechanisms of acupuncture action on the microbiota
  • 4Potential for personalized treatment based on microbial profile
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Limitations

  • 1Most mechanistic studies in animal models
  • 2Lack of large-scale randomized clinical trials
  • 3Non-standardized acupuncture protocols
  • 4Need for more research on therapeutic combinations
Dr. Marcus Yu Bin Pai

Expert Commentary

Dr. Marcus Yu Bin Pai

MD, PhD · Pain Medicine · Physical Medicine and Rehabilitation · Medical Acupuncture

Clinical Relevance

Migraine affects about 14.4% of the world's population and remains suboptimally controlled in a significant portion of patients even with the available prophylactic arsenal—topiramate, amitriptyline, beta-blockers, and anti-CGRP antibodies. This review by Zhong et al. positions the microbiota-gut-brain axis as a legitimate therapeutic target, not merely a speculative one. For the clinician treating refractory migraine, the identification of dysbiosis—reduced microbial diversity, decreased Faecalibacterium, and elevated Veillonella—as a measurable pathophysiological component opens a window for integrative reasoning. Patients reporting gastrointestinal comorbidities tied to attack cycles are natural candidates for this approach. Acupuncture at ST-36, SP-6, and GV-20, with evidence of restored alpha diversity and reinforcement of intestinal tight junction proteins, can rationally be incorporated into the multimodal therapeutic plan for these cases, even before large-scale clinical trials consolidate grade A recommendations.

Notable Findings

The most robust finding of this review is the consistency of the dysbiotic profile in migraine: reduction of Faecalibacterium—a producer of short-chain fatty acids with anti-inflammatory action—and elevation of Veillonella, with consequent increased circulating lipopolysaccharide load. The resulting cascade—LPS to immune activation to IL-6 and TNF-alpha to crossing of the blood-brain barrier to trigeminovascular activation—offers a coherent mechanistic explanation for the periodicity of attacks in some patients. Equally notable is the convergence of acupuncture's actions: microbiota modulation, upregulation of ZO-1, occludin, and claudin-1 in the intestinal barrier, attenuation of the HPA axis, and increase in BDNF. The fact that such distinct mechanisms converge through specific acupuncture points reinforces the neurobiological plausibility of the technique, shifting the debate from the territory of belief to that of applied neurophysiology.

From My Experience

In my pain clinic practice, I have a well-defined subgroup of patients with chronic migraine who arrive already on two or three prophylactics and who almost invariably report irritable bowel syndrome or episodes of constipation that worsen in the week before an attack. For this profile, acupuncture typically offers perceptible response within four to six sessions—reduction in attack frequency and improvement in bowel pattern reported together, which has always seemed to me suggestive of a shared mechanism. The protocol I usually employ includes ST-36 and SP-6 as cardinal points of the gastrointestinal axis, paired with GV-20 and cranial points according to the aura pattern. I typically plan cycles of ten to twelve sessions with reassessment, maintaining monthly sessions in responders. I combine this with nutritional guidance for prebiotic support and, when there is marked anxiety as a trigger, I include techniques for HPA axis regulation. The patient who does not respond within the first six sessions rarely advances with isolated needling alone—in that case, I revisit the differential diagnosis before persisting.

PhD in Health Sciences, University of São Paulo. Board-certified in Pain Medicine, Physical Medicine and Rehabilitation, and Medical Acupuncture.

Full original article

Read the full scientific study

Pain Therapy · 2026

DOI: 10.1007/s40122-025-00793-9

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Scientific Review

Marcus Yu Bin Pai, MD, PhD

Marcus Yu Bin Pai, MD, PhD

CRM-SP: 158074 | RQE: 65523 · 65524 · 655241

PhD in Health Sciences, University of São Paulo. Board-certified in Pain Medicine, Physical Medicine and Rehabilitation, and Medical Acupuncture. Scientific review and curation of every entry in this library.

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Medical disclaimer: This content is for educational purposes only and does not replace consultation, diagnosis, or treatment by a qualified professional. Some information may be assisted by artificial intelligence and is subject to inaccuracies. Always consult a physician.

Content reviewed by the medical team at CEIMEC — Integrated Centre for Chinese Medicine Studies, a reference in Medical Acupuncture for over 30 years.